Rows: 145
Columns: 47
$ sample_id <chr> "bima_A_ATAC", "bima_B_ATAC", "bima_C_ATAC", "bim…
$ donor <chr> "bima", "bima", "bima", "bima", "eofe", "eofe", "…
$ condition_char <chr> "A", "B", "C", "D", "A", "B", "C", "D", "B", "A",…
$ condition_name <chr> "naive", "IFNg", "SL1344", "IFNg_SL1344", "naive"…
$ SL1344 <chr> "control", "control", "infected", "infected", "co…
$ IFNg <chr> "naive", "primed", "naive", "primed", "naive", "p…
$ stimulation_date <date> 2014-12-12, 2014-12-12, 2014-12-12, 2014-12-12, …
$ submission_date <date> 2015-01-20, 2015-01-20, 2015-01-20, 2015-01-20, …
$ i5_tag <chr> "N502", "N502", "N502", "N502", "N502", "N502", "…
$ i5_sequence <chr> "CTCTCTAT", "CTCTCTAT", "CTCTCTAT", "CTCTCTAT", "…
$ i7_tag <chr> "N702", "N701", "N704", "N703", "N706", "N705", "…
$ i7_sequence <chr> "CGTACTAG", "TAAGGCGA", "TCCTGAGC", "AGGCAGAA", "…
$ nextera_tag <chr> "Nextera tag_14", "Nextera tag_13", "Nextera tag_…
$ multiplex_pool <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1…
$ bioanalyzer <chr> "yes", "yes", "yes", "yes", "yes", "yes", "yes", …
$ nextera_kit <chr> "kit_24_1", "kit_24_1", "kit_24_1", "kit_24_1", "…
$ line_id <chr> "bima_1", "bima_1", "bima_1", "bima_1", "eofe_1",…
$ clone <dbl> 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 1, 1, 1…
$ replicate <dbl> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1…
$ ips_received <date> 2014-10-24, 2014-10-24, 2014-10-24, 2014-10-24, …
$ ips_started <date> 2014-10-24, 2014-10-24, 2014-10-24, 2014-10-24, …
$ passage_received <dbl> 40, 40, 40, 40, 35, 35, 35, 35, 28, 28, 38, 38, 2…
$ received_as <chr> "alive", "alive", "alive", "alive", "alive", "ali…
$ media <chr> "E8", "E8", "E8", "E8", "KSR", "KSR", "KSR", "KSR…
$ EB_formation <date> 2014-11-04, 2014-11-04, 2014-11-04, 2014-11-04, …
$ passage_diff <dbl> 42, 42, 42, 42, 36, 36, 36, 36, 32, 32, 42, 42, 3…
$ diff_start <date> 2014-11-07, 2014-11-07, 2014-11-07, 2014-11-07, …
$ salmonella_date <date> 2014-12-12, 2014-12-12, 2014-12-12, 2014-12-12, …
$ atac_date <date> 2014-12-12, 2014-12-12, 2014-12-12, 2014-12-12, …
$ flow_date <date> 2014-12-16, 2014-12-16, 2014-12-16, 2014-12-16, …
$ medium_changes <dbl> 6, 6, 6, 6, 8, 8, 8, 8, 9, 9, 11, 11, 9, 9, 9, 9,…
$ terminated <date> 2014-12-19, 2014-12-19, 2014-12-19, 2014-12-19, …
$ status <chr> "Success", "Success", "Success", "Success", "Succ…
$ mean_purity <dbl> 0.9850139, 0.9850139, 0.9850139, 0.9850139, 0.977…
$ max_purity <dbl> 0.9889400, 0.9889400, 0.9889400, 0.9889400, 0.979…
$ genotype_id <chr> "HPSI1113i-bima_1", "HPSI1113i-bima_1", "HPSI1113…
$ sex <chr> "male", "male", "male", "male", "female", "female…
$ ips_culture_days <dbl> 11, 11, 11, 11, 5, 5, 5, 5, 26, 26, 23, 23, 18, 1…
$ passage_diff_bins <dbl> 40, 40, 40, 40, 30, 30, 30, 30, 30, 30, 40, 40, 3…
$ max_purity_filtered <dbl> 0.9889400, 0.9889400, 0.9889400, 0.9889400, 0.979…
$ mean_purity_filtered <dbl> 0.9850139, 0.9850139, 0.9850139, 0.9850139, 0.977…
$ assigned <dbl> 20213226, 27158360, 29720460, 23275756, 21807156,…
$ assigned_frac <dbl> 0.7110973, 0.7276358, 0.6838026, 0.6774437, 0.666…
$ mt_frac <dbl> 0.22312846, 0.15385990, 0.14644551, 0.11751974, 0…
$ percent_duplication <dbl> 0.086860, 0.106955, 0.094512, 0.079756, 0.090006,…
$ short_long_ratio <dbl> 2.114210, 2.213082, 2.532606, 2.913072, 2.105560,…
$ peak_count <dbl> 180460, 172172, 208337, 181080, 170418, 173927, 1…